Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SNX9 ENSSSCG00000030535

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Description

sorting nexin 9 [Source:VGNC Symbol;Acc:VGNC:93326]

Location

Primary_assembly 1: 9,130,338-9,239,029 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 8 transcripts (splice variants), 251 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000070261.2	SNX9-206	4817	624aa	ENSSSCP00000069139.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QW16 A0A8D1AHI6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000090173.2	SNX9-207	4733	596aa	ENSSSCP00000059751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QN56	-
ENSSSCT00000077237.2	SNX9-205	4683	604aa	ENSSSCP00000070183.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QZ73	-
ENSSSCT00000053140.3	SNX9-204	3806	587aa	ENSSSCP00000043465.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AHV7 A0A8D1U786	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000071164.2	SNX9-208	3447	566aa	ENSSSCP00000068394.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RCL6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000061240.3	SNX9-203	1806	601aa	ENSSSCP00000054923.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BEG9	-
ENSSSCT00000030285.3	SNX9-202	1683	560aa	ENSSSCP00000027024.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LSD1	-
ENSSSCT00000082582.2	SNX9-201	1662	553aa	ENSSSCP00000060723.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QFA7	-

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Summary

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