Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HDAC6 ENSSSCG00000025545

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Description

histone deacetylase 6 [Source:VGNC Symbol;Acc:VGNC:88816]

Location

Primary_assembly X: 42,917,964-42,941,887 forward strand.

Sscrofa11.1:CM000830.5

About this gene

This gene has 4 transcripts (splice variants), 179 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000042378.3	HDAC6-203	3915	1159aa	ENSSSCP00000058228.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BPX4 A0A8D0XL49	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000047564.2	HDAC6-202	3785	1117aa	ENSSSCP00000033522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0XH36 I3LEZ7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000060383.3	HDAC6-204	3725	1087aa	ENSSSCP00000034715.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZT11 A0A8D0XKM5	-
ENSSSCT00000052564.2	HDAC6-201	3323	1074aa	ENSSSCP00000041005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AB47 A0A8D1D358	-

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Summary

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