Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Gene: CNOT4 ENSSSCG00000021354

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Description

CCR4-NOT transcription complex subunit 4 [Source:VGNC Symbol;Acc:VGNC:86836]

Location

Primary_assembly 18: 13,821,575-13,980,529 forward strand.

Sscrofa11.1:CM000829.5

About this gene

This gene has 3 transcripts (splice variants) and 240 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000043394.2	CNOT4-203	3556	710aa	ENSSSCP00000049845.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B0B4 A0A8D1UA66	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000029334.4	CNOT4-201	5858	575aa	ENSSSCP00000021626.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0IZ00 I3LC53	-
ENSSSCT00000017996.5	CNOT4-202	3328	642aa	ENSSSCP00000017512.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VQY4 F1SNI5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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