Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RHOT1 ENSSSCG00000017735

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Description

ras homolog family member T1 [Source:VGNC Symbol;Acc:VGNC:92293]

Location

Primary_assembly 12: 42,711,233-42,783,421 reverse strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 10 transcripts (splice variants), 277 orthologues and 23 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000036939.3	RHOT1-205	3342	752aa	ENSSSCP00000037756.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A1F4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000082888.1	RHOT1-203	5566	580aa	ENSSSCP00000069211.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QWH3 A0A8D1W040	-
ENSSSCT00000094656.1	RHOT1-202	5268	532aa	ENSSSCP00000079847.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FKW7	-
ENSSSCT00000085989.1	RHOT1-201	4238	551aa	ENSSSCP00000071323.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R4R0	-
ENSSSCT00000056201.3	RHOT1-206	3246	720aa	ENSSSCP00000035944.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZWW1 A0A8D0SRI1	-
ENSSSCT00000087981.2	RHOT1-208	3214	704aa	ENSSSCP00000063995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R0F8 A0A8D0XMP4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000081459.2	RHOT1-207	3201	705aa	ENSSSCP00000068384.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RCK8	-
ENSSSCT00000045634.3	RHOT1-209	3093	663aa	ENSSSCP00000034247.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZRP2 A0A8D1ZHE5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000052850.3	RHOT1-210	3059	631aa	ENSSSCP00000038352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A323 A0A8D1DHE1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000019302.4	RHOT1-204	2036	599aa	ENSSSCP00000018790.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TEC3 F1RKW4	-

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Summary

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