Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ERCC8 ENSSSCG00000016934

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Description

ERCC excision repair 8, CSA ubiquitin ligase complex subunit [Source:VGNC Symbol;Acc:VGNC:87765]

Location

Primary_assembly 16: 39,701,702-39,770,315 reverse strand.

Sscrofa11.1:CM000827.5

About this gene

This gene has 5 transcripts (splice variants), 201 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000018442.5	ERCC8-203	1913	373aa	ENSSSCP00000017943.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0IZA5 A0A8D0QN50	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000076268.2	ERCC8-205	3522	330aa	ENSSSCP00000071548.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RIS2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000039701.3	ERCC8-204	1639	274aa	ENSSSCP00000039028.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A517 A0A8D1F835	-
ENSSSCT00000057189.2	ERCC8-202	1600	369aa	ENSSSCP00000053071.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B973 A0A8D1D062	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000106177.1	ERCC8-201	666	203aa	ENSSSCP00000079742.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FKJ3	-

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Summary

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