Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ATG16L1 ENSSSCG00000016300

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Description

autophagy related 16 like 1 [Source:VGNC Symbol;Acc:VGNC:95967]

Location

Primary_assembly 15: 133,651,298-133,693,468 forward strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000028201.4	ATG16L1-204	3740	623aa	ENSSSCP00000027083.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U2G5 I3LSJ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000039133.2	ATG16L1-202	3318	588aa	ENSSSCP00000055057.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BG82 A0A8D1Q7I5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000056639.3	ATG16L1-203	2886	444aa	ENSSSCP00000039214.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A5J3 A0A4X1U2I7	-
ENSSSCT00000017750.5	ATG16L1-201	2370	607aa	ENSSSCP00000017269.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U562 F1SM42	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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