Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COP1 ENSSSCG00000015509

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Description

COP1 E3 ubiquitin ligase [Source:VGNC Symbol;Acc:VGNC:86894]

Location

Primary_assembly 9: 117,915,443-118,114,259 reverse strand.

Sscrofa11.1:CM000820.5

About this gene

This gene has 3 transcripts (splice variants), 219 orthologues and 25 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000016896.5	COP1-203	2739	730aa	ENSSSCP00000016445.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UCS4 F1S705	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000066287.1	COP1-202	2520	707aa	ENSSSCP00000047617.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AU34 A0A4X1U7J5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000066956.2	COP1-201	2450	706aa	ENSSSCP00000065527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U9Y2 A0A5G2QLS8	-

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Summary

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