Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRPF19 ENSSSCG00000013107

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Description

pre-mRNA processing factor 19 [Source:NCBI gene (formerly Entrezgene);Acc:100144769]

Gene Synonyms

nmp-200

Location

Primary_assembly 2: 10,851,579-10,860,836 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 4 transcripts (splice variants), 217 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000097193.1	PRPF19-204	2305	507aa	ENSSSCP00000081208.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VLV2 A0A8W4FPS6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000014327.5	PRPF19-201	2296	504aa	ENSSSCP00000013941.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1EFC0 B2CCY7	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000085623.2	PRPF19-203	2230	482aa	ENSSSCP00000068211.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QTF6	-
ENSSSCT00000070595.2	PRPF19-202	2074	502aa	ENSSSCP00000068436.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QU20	-

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Summary

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