Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: APTX ENSSSCG00000011001

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Description

aprataxin [Source:NCBI gene (formerly Entrezgene);Acc:387596]

Gene Synonyms

FHA-HIT

Location

Primary_assembly 10: 33,445,148-33,543,710 forward strand.

Sscrofa11.1:CM000821.5

About this gene

This gene has 6 transcripts (splice variants), 203 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000037470.3	APTX-202	1797	356aa	ENSSSCP00000053859.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QV47	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000073666.2	APTX-204	2008	344aa	ENSSSCP00000074287.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RBA0	-
ENSSSCT00000012043.3	APTX-201	1889	335aa	ENSSSCP00000011735.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SE72	-
ENSSSCT00000091246.2	APTX-206	1707	303aa	ENSSSCP00000065590.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QNG1	-
ENSSSCT00000084647.2	APTX-205	1161	292aa	ENSSSCP00000066267.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QN02	-
ENSSSCT00000067691.2	APTX-203	1123	288aa	ENSSSCP00000070382.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R8D5	-

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Summary

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