Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LYST ENSSSCG00000010151

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Description

lysosomal trafficking regulator [Source:VGNC Symbol;Acc:VGNC:89921]

Location

Primary_assembly 14: 55,433,597-55,633,484 forward strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 6 transcripts (splice variants), 200 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000074545.1	LYST-202	12984	3864aa	ENSSSCP00000063359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QGE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000050051.3	LYST-205	13144	3851aa	ENSSSCP00000041721.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ACM2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000011115.5	LYST-206	12982	3797aa	ENSSSCP00000010827.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RGY4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000050254.3	LYST-204	12849	3745aa	ENSSSCP00000050609.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B3D3	-
ENSSSCT00000033787.4	LYST-203	12752	3715aa	ENSSSCP00000036112.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZX72	-
ENSSSCT00000075392.2	LYST-201	4433	1379aa	ENSSSCP00000070746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RHD9	-

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Summary

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