Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SEC31A ENSSSCG00000009244

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Description

SEC31 homolog A, COPII coat complex component [Source:VGNC Symbol;Acc:VGNC:92680]

Location

Primary_assembly 8: 135,426,403-135,495,121 forward strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 8 transcripts (splice variants), 207 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000068908.2	SEC31A-205	4509	1251aa	ENSSSCP00000067869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QUP2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000064796.2	SEC31A-202	4691	1220aa	ENSSSCP00000044652.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AKV0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000049135.3	SEC31A-201	4560	1192aa	ENSSSCP00000059443.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BSM0	-
ENSSSCT00000091312.2	SEC31A-208	4524	1218aa	ENSSSCP00000068428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QUA2	-
ENSSSCT00000046857.3	SEC31A-206	4360	1197aa	ENSSSCP00000044016.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AJF0	-
ENSSSCT00000010124.5	SEC31A-203	4245	1200aa	ENSSSCP00000009858.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RVD4	-
ENSSSCT00000103662.1	SEC31A-207	4147	1181aa	ENSSSCP00000077933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FHZ2	-
ENSSSCT00000043066.3	SEC31A-204	3941	1067aa	ENSSSCP00000049913.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B0H0	-

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Summary

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