Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: STAMBP ENSSSCG00000008300

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Description

STAM binding protein [Source:VGNC Symbol;Acc:VGNC:93526]

Location

Primary_assembly 3: 69,133,978-69,188,192 reverse strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 4 transcripts (splice variants), 202 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000070377.2	STAMBP-201	1576	502aa	ENSSSCP00000066691.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R7W0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000058744.3	STAMBP-204	3060	494aa	ENSSSCP00000039881.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480ENI7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000009091.5	STAMBP-202	2746	394aa	ENSSSCP00000008862.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SLF9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000099088.1	STAMBP-203	2206	214aa	ENSSSCP00000077601.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FDV8	-

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Summary

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