Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LRRTM4 ENSSSCG00000008259

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Description

leucine rich repeat transmembrane neuronal 4 [Source:VGNC Symbol;Acc:VGNC:110286]

Location

Primary_assembly 3: 66,128,689-66,884,740 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 2 transcripts (splice variants), 416 orthologues and 22 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000047761.2	LRRTM4-202	2472	590aa	ENSSSCP00000047522.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AUJ3 A0A8D1SKH5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000009045.5	LRRTM4-201	4258	518aa	ENSSSCP00000008817.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W0V1 A0A4X1W5T3	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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