Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Gene: WDR47 ENSSSCG00000006840

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Description

WD repeat domain 47 [Source:VGNC Symbol;Acc:VGNC:94924]

Location

Primary_assembly 4: 111,006,968-111,076,918 forward strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 5 transcripts (splice variants) and 271 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000075937.2	WDR47-203	3964	923aa	ENSSSCP00000064845.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QLE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000091947.1	WDR47-204	5979	841aa	ENSSSCP00000081199.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FQC2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000091250.2	WDR47-205	3739	864aa	ENSSSCP00000059732.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q8Y5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000046652.3	WDR47-201	3654	894aa	ENSSSCP00000043180.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AGL5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000007491.5	WDR47-202	3552	860aa	ENSSSCP00000007295.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1S5Y8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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