Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: TRIM55 ENSSSCG00000006216

.

Description

tripartite motif containing 55 [Source:VGNC Symbol;Acc:VGNC:94420]

Location

Primary_assembly 4: 68,487,120-68,530,889 reverse strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 4 transcripts (splice variants), 272 orthologues and 75 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000006812.6	TRIM55-204	2667	540aa	ENSSSCP00000006627.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1LL22 F1RTY9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000023039.4	TRIM55-203	2741	531aa	ENSSSCP00000026421.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0MS04 I3LQP1	-
ENSSSCT00000030871.4	TRIM55-202	1743	444aa	ENSSSCP00000019605.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1C665 I3L6F4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000085441.1	TRIM55-201	870	241aa	ENSSSCP00000068339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UZE2 A0A8D1LKW0	-

.

Summary

.

.