Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ATL1 ENSSSCG00000005020

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Description

atlastin GTPase 1 [Source:VGNC Symbol;Acc:VGNC:85627]

Location

Primary_assembly 1: 180,299,256-180,405,837 forward strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 4 transcripts (splice variants), 214 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000005536.5	ATL1-203	2744	558aa	ENSSSCP00000005398.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SG47 F1SHX5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000005535.5	ATL1-204	2986	553aa	ENSSSCP00000005397.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SGI8 F1SHX6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000089833.2	ATL1-201	2672	556aa	ENSSSCP00000070861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RHK8	-
ENSSSCT00000090817.2	ATL1-202	2497	527aa	ENSSSCP00000065022.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QSP4 A0A8D0NPT5	-

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Summary

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