SAFB like transcription modulator [Source:VGNC Symbol;Acc:VGNC:93213]
Primary_assembly 1: 113,084,008-113,136,599 forward strand.
Sscrofa11.1:CM000812.5
This gene has 9 transcripts (splice variants), 213 orthologues and 2 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSSSCT00000005073.4 | SLTM-205 | 4462 | 1190aa | ENSSSCP00000004949.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8D1FRP2 F1S050 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, |
| ENSSSCT00000005071.5 | SLTM-208 | 5939 | 1150aa | ENSSSCP00000004947.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8D2CFQ2 F1S052 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000086226.2 | SLTM-209 | 5920 | 1142aa | ENSSSCP00000069697.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1TQD5 A0A5G2QXU2 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000052540.3 | SLTM-202 | 5136 | 983aa | ENSSSCP00000048723.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287AXW2 A0A8D0N6A6 | - |
| ENSSSCT00000087362.2 | SLTM-206 | 4414 | 1174aa | ENSSSCP00000062612.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1TQ24 A0A5G2QKM5 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000037087.3 | SLTM-204 | 3980 | 955aa | ENSSSCP00000052326.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287B7N2 | - |
| ENSSSCT00000039763.3 | SLTM-203 | 3881 | 934aa | ENSSSCP00000051325.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287B4G7 A0A8D1MEW6 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000043725.2 | SLTM-207 | 3031 | 648aa | ENSSSCP00000052986.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287B8Y8 A0A4X1TMP7 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000098767.1 | SLTM-201 | 341 | 62aa | ENSSSCP00000077783.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2R370 A0A8D1STE5 | - |
