Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: STXBP5 ENSSSCG00000004113

.

Description

syntaxin binding protein 5 [Source:VGNC Symbol;Acc:VGNC:93599]

Location

Primary_assembly 1: 18,345,363-18,513,252 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 8 transcripts (splice variants), 290 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000047188.3	STXBP5-204	7067	1179aa	ENSSSCP00000053382.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BBD6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000059358.3	STXBP5-207	7073	1098aa	ENSSSCP00000053731.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BBL2 A0A4X1VSS4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000079584.1	STXBP5-208	7058	1093aa	ENSSSCP00000068689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VQ65 A0A5G2RDB2	-
ENSSSCT00000079679.1	STXBP5-206	7038	1143aa	ENSSSCP00000071304.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R2H8	-
ENSSSCT00000061868.3	STXBP5-205	6935	1135aa	ENSSSCP00000038368.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A335 A0A4X1VQ59	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000004548.5	STXBP5-202	3752	1177aa	ENSSSCP00000004446.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1S7R8	-
ENSSSCT00000090598.2	STXBP5-203	3587	1122aa	ENSSSCP00000060484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QAR0 A0A8D1BL33	-
ENSSSCT00000068952.2	STXBP5-201	1164	309aa	ENSSSCP00000062920.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QLG7 A0A8D0SV12	-

.

Summary

.

.