Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SNRNP40 ENSSSCG00000003596

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Description

small nuclear ribonucleoprotein U5 subunit 40 [Source:VGNC Symbol;Acc:VGNC:93294]

Location

Primary_assembly 6: 87,839,337-87,879,570 reverse strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 4 transcripts (splice variants), 216 orthologues and 25 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000096410.1	SNRNP40-202	1465	358aa	ENSSSCP00000075865.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480U2S8 A0A4X1VU00	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000003991.5	SNRNP40-204	1491	339aa	ENSSSCP00000003900.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SVA6	-
ENSSSCT00000104999.1	SNRNP40-203	1226	341aa	ENSSSCP00000075352.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FAN3	-
ENSSSCT00000067981.2	SNRNP40-201	751	122aa	ENSSSCP00000069622.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VZU3 A0A8D0J262	-

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Summary

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