Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LRRC1 ENSSSCG00000001486

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Description

leucine rich repeat containing 1 [Source:VGNC Symbol;Acc:VGNC:103977]

Location

Primary_assembly 7: 26,860,140-26,989,698 reverse strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 2 transcripts (splice variants), 206 orthologues and 33 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000001658.5	LRRC1-201	3163	524aa	ENSSSCP00000001616.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UIR5 F1RZV9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000089956.2	LRRC1-202	3157	522aa	ENSSSCP00000071005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RA45 A0A8D0N218	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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