Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: PRPF4B ENSSSCG00000001002

.

Description

pre-mRNA processing factor 4B [Source:VGNC Symbol;Acc:VGNC:91845]

Location

Primary_assembly 7: 2,382,495-2,412,908 forward strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 4 transcripts (splice variants), 232 orthologues and 27 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000001094.5	PRPF4B-203	3242	1040aa	ENSSSCP00000001072.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0MMF1 F1RWZ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000044423.3	PRPF4B-201	3692	883aa	ENSSSCP00000051653.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B6D2 A0A8D1RKZ2	-
ENSSSCT00000050974.3	PRPF4B-204	3065	949aa	ENSSSCP00000047763.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AUZ8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000058729.3	PRPF4B-202	2741	868aa	ENSSSCP00000047004.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ASR5 A0A8D1REU5	-

.

Summary

.

.