Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Gene: CSF3 ENSSSCG00000017488

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Description

colony stimulating factor 3 [Source:VGNC Symbol;Acc:VGNC:87034]

Location

Primary_assembly 12: 22,333,449-22,338,753 reverse strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 3 transcripts (splice variants) and 242 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000068779.2	CSF3-203	4347	204aa	ENSSSCP00000066068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UG58 A0A5G2QVW3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSSSCT00000019041.6	CSF3-202	1419	200aa	ENSSSCP00000018536.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5S6GJ84 A0A8D1NVU7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000080327.2	CSF3-201	1328	164aa	ENSSSCP00000063397.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1TQ08 A0A8D1WT67	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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