Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
External references
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ID History
- Gene history

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Gene: VPS41 ENSSSCG00000016772

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Description

VPS41 subunit of HOPS complex [Source:VGNC Symbol;Acc:VGNC:94855]

Location

Primary_assembly 18: 55,301,624-55,466,628 forward strand.

Sscrofa11.1:CM000829.5

About this gene

This gene has 8 transcripts (splice variants) and 209 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000058623.3	VPS41-206	3140	963aa	ENSSSCP00000038145.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A2I1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000082129.2	VPS41-202	3156	948aa	ENSSSCP00000063796.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QIR0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000074380.2	VPS41-207	2844	839aa	ENSSSCP00000068767.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R3J3	-
ENSSSCT00000018259.5	VPS41-204	2806	829aa	ENSSSCP00000017767.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UHV5 A0A8D0JG93	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000061000.3	VPS41-203	2803	828aa	ENSSSCP00000033627.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZQ74 A0A4X1ULN1	-
ENSSSCT00000088941.1	VPS41-205	2745	808aa	ENSSSCP00000071779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RJ48 A0A8D1YQZ1	-
ENSSSCT00000079523.2	VPS41-208	2691	786aa	ENSSSCP00000071886.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R473 A0A8D1WL20	-
ENSSSCT00000093864.1	VPS41-201	2336	770aa	ENSSSCP00000078202.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1NWG4 A0A8D1WL49	-

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Summary

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