Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LIMS1 ENSSSCG00000008137

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Description

LIM zinc finger domain containing 1 [Source:VGNC Symbol;Acc:VGNC:110285]

Location

Primary_assembly 3: 47,606,230-47,672,884 reverse strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 7 transcripts (splice variants), 243 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000068750.2	LIMS1-203	3020	440aa	ENSSSCP00000060352.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QPY8 A0A8D1GME5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000104778.1	LIMS1-204	4860	430aa	ENSSSCP00000080036.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FKN3	-
ENSSSCT00000043323.3	LIMS1-205	4802	364aa	ENSSSCP00000059461.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BTD0 A0A4X1VUA5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000008914.5	LIMS1-201	4227	341aa	ENSSSCP00000008688.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SU28	-
ENSSSCT00000071977.1	LIMS1-207	4221	326aa	ENSSSCP00000070891.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1W022 A0A5G2RHN2	-
ENSSSCT00000046796.3	LIMS1-202	4209	335aa	ENSSSCP00000054985.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BG02	-
ENSSSCT00000078059.2	LIMS1-206	2997	386aa	ENSSSCP00000071910.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R6E0 A0A8D1M8F7	-

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Summary

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