Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRPS1 ENSSSCG00000006018

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Description

transcriptional repressor GATA binding 1 [Source:VGNC Symbol;Acc:VGNC:94471]

Location

Primary_assembly 4: 22,905,637-23,159,546 forward strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 5 transcripts (splice variants), 209 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000055503.3	TRPS1-205	5916	1295aa	ENSSSCP00000034460.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3L800	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000096001.1	TRPS1-201	6822	284aa	ENSSSCP00000074780.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F907	-
ENSSSCT00000105188.1	TRPS1-204	6271	1285aa	ENSSSCP00000079836.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FK47	-
ENSSSCT00000104576.1	TRPS1-203	6214	1284aa	ENSSSCP00000079536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FJY6	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000006604.5	TRPS1-202	5665	1294aa	ENSSSCP00000006428.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1S1J7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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