Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: MALT1 ENSSSCG00000004917

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Description

MALT1 paracaspase [Source:VGNC Symbol;Acc:VGNC:89961]

Location

Primary_assembly 1: 162,076,955-162,144,880 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 5 transcripts (splice variants) and 195 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000034163.4	MALT1-204	3178	850aa	ENSSSCP00000030144.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TJ21 K7GQH5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000073118.2	MALT1-202	4571	839aa	ENSSSCP00000070842.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480T4I3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000049658.2	MALT1-203	4465	782aa	ENSSSCP00000036457.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZXP5 A0A4X1TNK0	-
ENSSSCT00000053114.2	MALT1-201	3587	797aa	ENSSSCP00000033094.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZNE2 A0A4X1TND9	-
ENSSSCT00000005425.5	MALT1-205	3172	848aa	ENSSSCP00000005290.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SM41	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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