Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPTSSB ENSSSCG00000029080

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Description

serine palmitoyltransferase small subunit B [Source:VGNC Symbol;Acc:VGNC:93441]

Location

Primary_assembly 13: 101,023,812-101,059,885 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 3 transcripts (splice variants), 197 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000077700.2	SPTSSB-202	2720	76aa	ENSSSCP00000060394.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RLJ3 A0A8D1MU24	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000081098.2	SPTSSB-201	2364	76aa	ENSSSCP00000073208.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RLJ3 A0A8D1MU24	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000083401.2	SPTSSB-203	1406	73aa	ENSSSCP00000065519.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0JR44 A0A8D1GIS5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Gene tree

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