Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: HOXA9 ENSSSCG00000028997

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Description

homeobox A9 [Source:VGNC Symbol;Acc:VGNC:110314]

Location

Primary_assembly 18: 45,408,375-45,411,509 forward strand.

Sscrofa11.1:CM000829.5

About this gene

This gene has 2 transcripts (splice variants), 238 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000029161.4	HOXA9-201	2055	272aa	ENSSSCP00000021454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TU47 F1SHT5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000068446.2	HOXA9-202	1879	213aa	ENSSSCP00000065323.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QMQ4	-

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Gene tree

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