Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SCAF4 ENSSSCG00000021023

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Description

SR-related CTD associated factor 4 [Source:VGNC Symbol;Acc:VGNC:92603]

Location

Primary_assembly 13: 195,333,260-195,396,204 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 3 transcripts (splice variants), 235 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000067926.2	SCAF4-202	4050	1148aa	ENSSSCP00000063541.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QI18	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000076417.2	SCAF4-203	8553	1126aa	ENSSSCP00000071904.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RJB4 A0A8D1CYJ2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000070259.2	SCAF4-201	8106	1114aa	ENSSSCP00000071123.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R464 A0A8D1ADM0	-

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Gene tree

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