Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CTCFL ENSSSCG00000007505

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Description

CCCTC-binding factor like [Source:VGNC Symbol;Acc:VGNC:95795]

Location

Primary_assembly 17: 57,860,787-57,891,924 reverse strand.

Sscrofa11.1:CM000828.5

About this gene

This gene has 3 transcripts (splice variants), 396 orthologues and 26 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000097750.1	CTCFL-201	2156	659aa	ENSSSCP00000075997.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1GNA6 A0A8W4F9J4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000008219.4	CTCFL-203	2945	647aa	ENSSSCP00000008000.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1A6P7 A5GFN3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000101035.1	CTCFL-202	2006	609aa	ENSSSCP00000079432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FKK2	-

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Gene tree

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