Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CBX1 ENSSSCG00000017529

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Description

chromobox 1 [Source:VGNC Symbol;Acc:VGNC:97914]

Location

Primary_assembly 12: 24,315,518-24,351,052 reverse strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 5 transcripts (splice variants), 247 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000019083.4	CBX1-204	2422	185aa	ENSSSCP00000018577.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UNT9 F1RWH1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000100866.1	CBX1-203	1234	174aa	ENSSSCP00000080797.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FNN1	-
ENSSSCT00000073975.2	CBX1-202	1049	181aa	ENSSSCP00000062059.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QBZ8	-
ENSSSCT00000104089.1	CBX1-205	989	161aa	ENSSSCP00000081346.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FQN3	-
ENSSSCT00000072697.2	CBX1-201	768	178aa	ENSSSCP00000060982.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QRW0 A0A8D1PLT8	-

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Paralogues

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