Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RNF40 ENSSSCG00000007786

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Description

ring finger protein 40 [Source:VGNC Symbol;Acc:VGNC:92393]

Location

Primary_assembly 3: 17,622,319-17,639,900 reverse strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 4 transcripts (splice variants), 198 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000088490.1	RNF40-201	6213	1003aa	ENSSSCP00000063454.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QGM5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000008534.5	RNF40-202	6210	1002aa	ENSSSCP00000008315.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RG77	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000089860.2	RNF40-203	6090	962aa	ENSSSCP00000066021.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QPN1	-
ENSSSCT00000072341.2	RNF40-204	5910	902aa	ENSSSCP00000063666.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QIE3	-

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Paralogues

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