Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: OTX2 ENSSSCG00000005063

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Description

orthodenticle homeobox 2 [Source:VGNC Symbol;Acc:VGNC:98171]

Location

Primary_assembly 1: 186,028,579-186,038,229 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 3 transcripts (splice variants), 205 orthologues and 44 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000005580.5	OTX2-201	2104	297aa	ENSSSCP00000005442.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1WD79 F1SSM3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000036920.3	OTX2-203	2158	289aa	ENSSSCP00000057237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1WD11 A0A8D0I472	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000104008.1	OTX2-202	784	168aa	ENSSSCP00000075751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FBS7	-

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Paralogues

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