Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ENSSSCG00000016711

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Description

chromobox 3 [Source:UniProtKB Gene Name;Acc:A0A287B039]

Location

Primary_assembly 18: 46,193,140-46,204,714 reverse strand.

Sscrofa11.1:CM000829.5

About this gene

This gene has 3 transcripts (splice variants), 111 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000052029.3	-	2558	183aa	ENSSSCP00000049772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TVI4 A0A8D0K0G2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000018192.5	-	1872	173aa	ENSSSCP00000017701.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U0R7 A0A8D0KAK1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000051760.3	-	1711	71aa	ENSSSCP00000049786.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B039 A0A4X1U0T5	-

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Orthologues

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