Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: MAP1LC3B ENSSSCG00000002655

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Description

microtubule associated protein 1 light chain 3 beta [Source:NCBI gene (formerly Entrezgene);Acc:100462754]

Gene Synonyms

LC3B

Location

Primary_assembly 6: 1,915,387-1,941,069 reverse strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 3 transcripts (splice variants), 191 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000002946.4	MAP1LC3B-201	6079	125aa	ENSSSCP00000002867.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1T8W3 D7RA29	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000047651.3	MAP1LC3B-202	1431	124aa	ENSSSCP00000052785.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B8I0 A0A8D1CGJ5	-
ENSSSCT00000075357.2	MAP1LC3B-203	334	69aa	ENSSSCP00000067965.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QSQ7 A0A8D0RJK0	-

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Orthologues

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