Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: ENSSSCG00000063473

.

Location

Primary_assembly 6: 72,834,332-72,839,065 reverse strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 10 transcripts (splice variants), 709 orthologues and 14 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000050339.2	-	1494	497aa	ENSSSCP00000048442.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AWC9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000003827.4	-	1449	482aa	ENSSSCP00000003740.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SUY5	-
ENSSSCT00000095253.1	-	1434	477aa	ENSSSCP00000076977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R2A8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000104621.1	-	1425	474aa	ENSSSCP00000078810.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BMD9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000038849.3	-	1419	472aa	ENSSSCP00000032745.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AP56	-
ENSSSCT00000101353.1	-	1416	471aa	ENSSSCP00000076707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AQK0	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000098013.1	-	1413	470aa	ENSSSCP00000076648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F8E1	-
ENSSSCT00000094360.1	-	1389	462aa	ENSSSCP00000077975.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FHA5	-
ENSSSCT00000102571.1	-	1386	461aa	ENSSSCP00000077845.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F9Z8	-
ENSSSCT00000093688.1	-	1380	459aa	ENSSSCP00000077570.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FFZ4	-

.

Breeds

.

Gene tree

Orthologues

Paralogues

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data