Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: OCIAD1 ENSSSCG00000058121

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Description

OCIA domain containing 1 [Source:UniProtKB Gene Name;Acc:A0A8W4FPM5]

Location

Primary_assembly 8: 38,745,338-38,769,253 forward strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 4 transcripts (splice variants), 135 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000095523.1	OCIAD1-203	1675	247aa	ENSSSCP00000075257.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FAD4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000092598.1	OCIAD1-202	1478	196aa	ENSSSCP00000075976.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FAV4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000104227.1	OCIAD1-204	1424	189aa	ENSSSCP00000078347.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FGA8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000099379.1	OCIAD1-201	1364	220aa	ENSSSCP00000080883.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FPM5	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data