Gene: LSM2 ENSSSCG00000039021

Description

LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene (formerly Entrezgene);Acc:100144534]

Location

Sscrofa11.1:CM000818.5

About this gene

This gene has 3 transcripts (splice variants) and 178 orthologues.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000107865.1	LSM2-203	869	95aa	ENSSSCP00000082248.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1V9D9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000107864.1	LSM2-202	753	42aa	ENSSSCP00000082247.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000061520.2	LSM2-201	732	95aa	ENSSSCP00000051484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1V9D9 A5A8V8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Breeds

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.