Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
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Gene: LTN1 ENSSSCG00000030528

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Description

listerin E3 ubiquitin protein ligase 1 [Source:VGNC Symbol;Acc:VGNC:89892]

Location

Primary_assembly 13: 192,295,766-192,358,717 reverse strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 6 transcripts (splice variants) and 211 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000030539.4	LTN1-202	7752	1752aa	ENSSSCP00000020792.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0Q1H3 I3L9S9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000061785.3	LTN1-201	7341	1613aa	ENSSSCP00000042631.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AF66	-
ENSSSCT00000093081.1	LTN1-205	6515	1731aa	ENSSSCP00000079105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0Q601 A0A8W4FLC6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000100524.1	LTN1-204	6460	1726aa	ENSSSCP00000079356.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FJG3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000093278.1	LTN1-206	6150	1601aa	ENSSSCP00000080190.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FPF7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000056141.3	LTN1-203	6034	1570aa	ENSSSCP00000031238.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZIB3 A0A8D1QSZ9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data