Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: SCLT1 ENSSSCG00000029943

.

Description

sodium channel and clathrin linker 1 [Source:VGNC Symbol;Acc:VGNC:92626]

Location

Primary_assembly 8: 95,949,572-96,199,110 forward strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 5 transcripts (splice variants) and 192 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000027726.4	SCLT1-204	2827	685aa	ENSSSCP00000020466.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480JSY7 A0A4X1VFW2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000038334.3	SCLT1-203	6155	675aa	ENSSSCP00000054632.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BDN1 A0A4X1VFW7	-
ENSSSCT00000045819.3	SCLT1-205	1684	304aa	ENSSSCP00000042208.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ADW9	-
ENSSSCT00000106417.1	SCLT1-202	1288	172aa	ENSSSCP00000076992.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VHM7 A0A8D0J8U6	-
ENSSSCT00000095880.1	SCLT1-201	542	77aa	ENSSSCP00000077170.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VB34 A0A8D1R5D4	-

.

Breeds

.

Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data