Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC12A4 ENSSSCG00000028609

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Description

solute carrier family 12 member 4 [Source:NCBI gene (formerly Entrezgene);Acc:396992]

Location

Primary_assembly 6: 28,553,616-28,576,504 reverse strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 3 transcripts (splice variants), 215 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000052698.3	SLC12A4-202	3938	1086aa	ENSSSCP00000047374.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UI23 O18887	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000029325.3	SLC12A4-201	5055	1055aa	ENSSSCP00000023011.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UI53 I3LG18	-
ENSSSCT00000054075.3	SLC12A4-203	4094	1080aa	ENSSSCP00000053273.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BAA6 A0A4X1UF60	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data