Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: SAMD9 ENSSSCG00000027372

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Description

sterile alpha motif domain containing 9 [Source:UniProtKB Gene Name;Acc:I3LB61]

Location

Primary_assembly 9: 72,964,869-72,999,258 reverse strand.

Sscrofa11.1:CM000820.5

About this gene

This gene has 3 transcripts (splice variants) and 246 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000029122.4	SAMD9-202	5475	1583aa	ENSSSCP00000021280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0LYF9 I3LB61	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000041260.3	SAMD9-201	6334	1533aa	ENSSSCP00000052109.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B7Q2	-
ENSSSCT00000080595.2	SAMD9-203	4985	1583aa	ENSSSCP00000067179.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0LYF9 I3LB61	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data