Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PCDHGA4 ENSSSCG00000027371

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Description

protocadherin gamma subfamily A, 4 [Source:UniProtKB Gene Name;Acc:A0A287BLQ5]

Location

Primary_assembly 2: 142,993,554-143,156,556 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 7 transcripts (splice variants), 42 orthologues and 29 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000015723.5	PCDHGA4-207	4749	963aa	ENSSSCP00000015308.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RMT6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000054998.3	PCDHGA4-202	4795	938aa	ENSSSCP00000046451.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ARC5	-
ENSSSCT00000053930.3	PCDHGA4-205	4691	931aa	ENSSSCP00000052605.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B7V8	-
ENSSSCT00000053514.3	PCDHGA4-203	4682	935aa	ENSSSCP00000048661.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AWY5 A0A8D1C3F9	-
ENSSSCT00000044559.3	PCDHGA4-204	4651	921aa	ENSSSCP00000057100.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BLQ5	-
ENSSSCT00000054789.2	PCDHGA4-201	4523	943aa	ENSSSCP00000049562.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AZH4	-
ENSSSCT00000029817.4	PCDHGA4-206	4498	933aa	ENSSSCP00000024468.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LK54	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data