Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CTCF ENSSSCG00000024253

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Description

CCCTC-binding factor [Source:VGNC Symbol;Acc:VGNC:87057]

Location

Primary_assembly 6: 28,195,647-28,261,009 forward strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 4 transcripts (splice variants), 265 orthologues and 26 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000030108.4	CTCF-201	3760	751aa	ENSSSCP00000019814.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UKY7 A0A8D0QDE2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000038973.3	CTCF-202	5622	727aa	ENSSSCP00000036565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UJI5 A0A8D1TXS5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000101355.1	CTCF-204	3890	748aa	ENSSSCP00000076295.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FDB1	-
ENSSSCT00000065407.3	CTCF-203	3816	725aa	ENSSSCP00000054977.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BF77 A0A8D1MR87	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data