Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VSX1 ENSSSCG00000023887

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Description

visual system homeobox 1 [Source:VGNC Symbol;Acc:VGNC:95566]

Location

Primary_assembly 17: 30,848,484-30,856,213 reverse strand.

Sscrofa11.1:CM000828.5

About this gene

This gene has 2 transcripts (splice variants) and 174 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000025097.4	VSX1-202	2077	364aa	ENSSSCP00000023121.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1V1M7 I3LGC8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000073186.2	VSX1-201	880	227aa	ENSSSCP00000069305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R555	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data