Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ENSSSCG00000022261

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Description

tripartite motif containing 31 [Source:VGNC Symbol;Acc:VGNC:94406]

Location

Primary_assembly 7: 22,665,346-22,681,617 reverse strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 5 transcripts (splice variants), 47 orthologues and 75 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000098580.2	-	4898	575aa	ENSSSCP00000080050.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FP18	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000107304.1	-	4960	410aa	ENSSSCP00000081697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000107305.1	-	4171	575aa	ENSSSCP00000081698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000107306.1	-	1989	416aa	ENSSSCP00000081699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000001357.6	-	1958	543aa	ENSSSCP00000001326.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RYH5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data