Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HDAC8 ENSSSCG00000021200

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Description

histone deacetylase 8 [Source:VGNC Symbol;Acc:VGNC:111445]

Location

Primary_assembly X: 58,210,192-58,450,573 reverse strand.

Sscrofa11.1:CM000830.5

About this gene

This gene has 10 transcripts (splice variants), 202 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000072563.2	HDAC8-204	1394	428aa	ENSSSCP00000061689.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QC79	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000078850.2	HDAC8-203	7675	362aa	ENSSSCP00000066640.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QPL1	-
ENSSSCT00000047819.3	HDAC8-209	1888	415aa	ENSSSCP00000056206.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1TWY5 A0A8D1XFL5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000013570.5	HDAC8-207	1352	414aa	ENSSSCP00000013206.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RPM1	-
ENSSSCT00000025734.4	HDAC8-210	1315	224aa	ENSSSCP00000024739.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LKX4	-
ENSSSCT00000069276.2	HDAC8-206	1265	385aa	ENSSSCP00000074529.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RHA1	-
ENSSSCT00000097223.1	HDAC8-205	1172	354aa	ENSSSCP00000081338.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FRN3	-
ENSSSCT00000082122.2	HDAC8-202	1157	350aa	ENSSSCP00000063658.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QNJ6	-
ENSSSCT00000096646.1	HDAC8-208	1079	323aa	ENSSSCP00000078107.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FFL4	-
ENSSSCT00000027685.4	HDAC8-201	905	266aa	ENSSSCP00000019421.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3L5X0	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data