Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: MSH6 ENSSSCG00000020931

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Description

mutS homolog 6 [Source:VGNC Symbol;Acc:VGNC:90420]

Location

Primary_assembly 3: 92,785,664-92,814,238 reverse strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 4 transcripts (splice variants), 202 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000028816.4	MSH6-204	6244	1362aa	ENSSSCP00000027767.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LUG7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000028757.3	MSH6-203	6047	1333aa	ENSSSCP00000023698.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SFD3 I3LHZ9	-
ENSSSCT00000049042.2	MSH6-202	5652	1231aa	ENSSSCP00000042401.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AEU7 A0A4X1SFD8	-
ENSSSCT00000077552.1	MSH6-201	5479	1236aa	ENSSSCP00000066888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R8F1 A0A8D1L812	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data