Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HOXA1 ENSSSCG00000016707

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Description

homeobox A1 [Source:VGNC Symbol;Acc:VGNC:88933]

Location

Primary_assembly 18: 45,477,461-45,480,152 forward strand.

Sscrofa11.1:CM000829.5

About this gene

This gene has 2 transcripts (splice variants), 200 orthologues, 41 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000018188.4	HOXA1-202	2211	336aa	ENSSSCP00000017697.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1HKB6 F1SHS9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000058453.2	HOXA1-201	651	138aa	ENSSSCP00000037164.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TUQ4 A0A8D1HGB5	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data