Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: IRF5 ENSSSCG00000016573

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Description

interferon regulatory factor 5 [Source:VGNC Symbol;Acc:VGNC:89208]

Location

Primary_assembly 18: 19,678,687-19,691,243 reverse strand.

Sscrofa11.1:CM000829.5

About this gene

This gene has 5 transcripts (splice variants), 218 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000100872.1	IRF5-201	4046	578aa	ENSSSCP00000080105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FP74	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000040773.3	IRF5-203	3760	520aa	ENSSSCP00000040010.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480Z9E8 A0A8D1FJZ3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000032748.4	IRF5-204	3751	517aa	ENSSSCP00000029981.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7GQ15	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000018043.4	IRF5-202	2841	519aa	ENSSSCP00000017557.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1H5U8 F1SMP9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000101827.1	IRF5-205	2227	513aa	ENSSSCP00000079022.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FL46	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data